+86 0755-23251735

Catalog Products

In Stock | Lighting Up the RNA World with "Click" Chemistry — 5-Ethynyl-UTP: A New Solution for Nascent RNA Labeling

2025/10/22 17:21:14 Browse volume(45)


Nucleoside Raw Materials

5-Ethynyl-UTP


I. Product Overview

1004955-96-7 Structural Formula

Chinese Name: 5-Ethynyluridine 5ʹ-(tetrahydrogen triphosphate)

English Name: 5-Ethynyluridine 5ʹ-(tetrahydrogen triphosphate)

Abbreviation: 5-Ethynyl-UTP

CAS Number: 1004955-96-7

Molecular Formula: C11H15N2O15P3

Molecular Weight: 508.16

Specification: 25 ul / 100 ul / 1000 ul (Custom packaging supported)

Form: Aqueous solution

Item Number: G09010023

Concentration: ~100 mM in water

Transport: Low temperature transport

5-Ethynyl-UTP, 5-Ethynyluridine 5ʹ-(tetrahydrogen triphosphate) is a chemically modified nucleoside triphosphate that can be directly incorporated into RNA molecules, and is a core raw material for nascent RNA labeling, detection, and enrichment.



II. Core Advantages

High Sensitivity: Click chemistry reaction efficiency is extremely high, with clear signals and low background noise.

High Specificity: Ethynyl and azide groups are almost absent in biological systems, resulting in extremely low reaction background.

Good Biocompatibility: Reaction conditions are mild, causing minimal damage to RNA.

Versatility: By replacing different azide reporter molecules, various purposes such as detection (fluorescence) and enrichment (biotin) can be achieved.

Safety: No need to use radioactive labels, making operations simpler and safer.

One click, instantly illuminates the RNA synthesis process.



III. Working Principle

Principle: 5-Ethynyl-UTP can be directly incorporated by RNA polymerase into nascent RNA chains, replacing part of the natural UTP.

Detection Method: After incorporation, using its terminal alkyne group (–C≡CH), it can react with azide-labeled fluorescent dyes or biotin via click chemistry, enabling RNA visualization or enrichment.

Typical Reaction System: Cu(I)-catalyzed azide-alkyne cycloaddition (CuAAC).

Detection Forms:

  • Fluorescence microscopy observation (e.g., EU-Click staining);

  • Flow cytometry (detecting RNA synthesis activity);

  • RNA pull-down / RNA-seq analysis (EU-RNA enrichment followed by sequencing);



IV. Application Scenarios

1. RNA Synthesis Rate Detection: Monitor changes in RNA transcription rates under different conditions (drug treatment, stress, differentiation).

2. Transcriptional Regulation Verification: Used in combination with transcriptional inhibitors (e.g., actinomycin D) to determine if RNA synthesis is blocked.

3. RNA Capture and Sequencing (EU-seq): Label and biotinylate nascent RNA, then enrich with streptavidin magnetic beads for sequencing.



V. Marker Comparison

5-Ethynyl-UTP Related Marker Comparison Table.jpg



VI. Experimental Operation Points

  • In vitro transcription system: 5-Ethynyl-UTP can directly replace a portion of UTP (typically 5–20% replacement ratio).

  • Intracellular labeling: Commonly used 5-Ethynyl-uridine (EU) enters cells and is phosphorylated in vivo to 5-Ethynyl-UTP.

  • Detection chemical reagents: Recommended to pair with Alexa Fluor 488-azide (fluorescence) or biotin-azide (enrichment).




Extended Services

Making RNA visualization no longer complicated—5-Ethynyl-UTP accurately reveals the dynamic blueprint of gene expression for you.

For high-quality nucleoside raw materials or custom packaging services, please call +86 13302967066!

Shenzhen Hepattack Bioscience & Technology Co. Ltd. is committed to providing reliable domestic alternative solutions for gene sequencing, molecular diagnosis, and microbial detection.

=
In Vitro Molecular Diagnosis | Gene Sequencing | Microbial Detection



END


Shenzhen Hepattack Bioscience & Technology Co. Ltd.

Founded in 2015, it is a high-tech enterprise focusing on microbial testing gene sequencing and in vitro molecular diagnostics in the R&D, production, and sales of biochemical reagent raw materials. Committed to providing high-quality biochemical reagent raw materials and professional custom synthesis services, the product portfolio covers more than a dozen categories and nearly a thousand innovative products. Upholding the core philosophy of “customer first, integrity and professionalism”, we serve with dedication to meet customers’ diverse needs in research and testing.

Hepattack WeChat QR Code
Follow Us
Get the latest product updates

Official WeChat account: Shenzhen Hepattack Bioscience & Technology Co. Ltd.

Official Website: http://www.hepattack.com  

Hotline: +86 0755-23251735

QQ: 2370561481

Email: sales@hepattack.com

All products are used for scientific research or industrial applications only.

scan it,Follow us